About:
CoaSim is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It efficiently constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro satellite haplotypes/genotypes. The generated sample can afterwards be separated in cases and controls, depending on the states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies.

Author:
Thomas Mailund [contact developer]

Rating:	reset 1 2 3 4 5 6 7 8 9 10
8.39/10.00 (1 vote)

Homepage:
http://www.daimi.au.dk/~mailund/CoaSim
Tar/GZ:
http://www.daimi.au.dk/[..]oaSim/download/coasim-guile-4.1.0.tar.gz
Changelog:
http://www.daimi.au.dk/~mailund/bugtrack/changelog_page.php
RPM package:
http://www.daimi.au.dk/[..]m/download/coasim-guile-4.1.0-1.i386.rpm

Trove categories: [change]

[Development Status]		5 - Production/Stable, 6 - Mature
[Environment]		Console (Text Based), X11 Applications :: Qt
[Intended Audience]		Advanced End Users, Developers
[License]		OSI Approved :: GNU General Public License (GPL)
[Programming Language]		C++, Python, Scheme
[Topic]		Scientific/Engineering :: Bioinformatics, Scientific/Engineering :: Medical Science Apps.

Dependencies: [change]
No dependencies filed

 Branches

Branch	Version	Last release	License	URLs
Default	4.1.0	09-Feb-2006	GNU General Public License (GPL)
GUI	3.0.4	02-Feb-2005	GNU General Public License (GPL)
Guile A Guile Scheme interface.	4.2.0	28-Feb-2006	GNU General Public License (GPL)
Python Python bindings for CoaSim.	1.1	28-Feb-2006	GNU General Public License (GPL)

 Comments

[»] CoaSim Application Note at BMC Bioinformatics
by Thomas Mailund - Oct 17th 2005 00:36:36

A paper describing CoaSim has just been publiced in BMC Bioinformatics:

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